Index

A

add_isotopomer() (isodesign.base.process.Process method) analyse_model() (isodesign.base.process.Process method) apply_criteria() (isodesign.base.score.ScoreHandler method) apply_log() (isodesign.base.process.Process method)

apply_number_labeled_inputs() (isodesign.base.score.Score method) apply_operations() (isodesign.base.score.ScoreHandler method) apply_price() (isodesign.base.score.Score method) apply_sum_nb_flux_sd() (isodesign.base.score.Score method) apply_sum_sd() (isodesign.base.score.Score method)

C

check_err_files() (isodesign.base.process.Process method) clear_previous_linp() (isodesign.base.process.Process method) clear_previous_results() (isodesign.base.process.Process method) clear_tmp_folder() (isodesign.base.process.Process method)

compute() (isodesign.base.score.Score method) configure_linp_files() (isodesign.base.process.Process method) configure_unlabelled_form() (isodesign.base.process.Process method) copy_files() (isodesign.base.process.Process method) create_tmp_folder() (isodesign.base.process.Process method)

D

data (isodesign.base.process.file_info attribute)

data_filter() (isodesign.base.process.Process method)

E

export_data() (isodesign.base.process.Process method)

F

file_info (class in isodesign.base.process)

FILES_EXTENSION (isodesign.base.process.Process attribute)

G

generate_combinations() (isodesign.base.process.Process method) generate_fraction() (isodesign.base.isotopomer.Isotopomer method) generate_labelling_combinations() (isodesign.base.label_input.LabelInput method) generate_linp_files() (isodesign.base.process.Process method)

generate_score() (isodesign.base.process.Process method) generate_summary() (isodesign.base.process.Process method) generate_vmtf_file() (isodesign.base.process.Process method) get_isotopomer_price() (isodesign.base.process.Process method) get_path_input_netw() (isodesign.base.process.Process method)

I

influx_simulation() (isodesign.base.process.Process method) intervals_nb (isodesign.base.isotopomer.Isotopomer property) isodesign.base.isotopomer module isodesign.base.label_input module

isodesign.base.process module isodesign.base.score module Isotopomer (class in isodesign.base.isotopomer)

L

LabelInput (class in isodesign.base.label_input) labelling (isodesign.base.isotopomer.Isotopomer property)

linp_info (class in isodesign.base.process) load_model() (isodesign.base.process.Process method) lower_bound (isodesign.base.isotopomer.Isotopomer property)

M

module isodesign.base.isotopomer isodesign.base.label_input isodesign.base.process isodesign.base.score

N

nb_labeled_inputs (isodesign.base.process.linp_info attribute)

P

path (isodesign.base.process.file_info attribute)

Process (class in isodesign.base.process)

R

register_scores() (isodesign.base.process.Process method) reintegrate_linp_configuration() (isodesign.base.process.Process method)

remove_isotopomer() (isodesign.base.process.Process method) remove_linp_configuration() (isodesign.base.process.Process method)

S

save_process_to_file() (isodesign.base.process.Process method) Score (class in isodesign.base.score)

ScoreHandler (class in isodesign.base.score) step (isodesign.base.isotopomer.Isotopomer property) structurally_identified_fluxes() (isodesign.base.score.Score method)

T

total_price (isodesign.base.process.linp_info attribute)

U

upper_bound (isodesign.base.isotopomer.Isotopomer property)